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Synthesis, Characterization and Antibacterial Evaluation With Computational Study of new Schiff Bases Derived from 7-Hydroxy-4-Methyl Coumarin

Dana M. Hussein1, Sahar B. Al-juboory2 and Ammar A. Razzak Mahmood3

1Faculty of Medical Sciences-School of Pharmacy-Department of Pharmaceutical Chemistry-University of Sulaimani-Sulaimani-Iraq.

2College of Al-Rafiden University- Dept. of Pharmacy-Baghdad-Iraq.

3College of Pharmacy-Department of Pharmaceutical Chemistry-University of Baghdad- Baghdad-Bab-Almudam-Iraq.

Corresponding Author E-mail: kubbaammar1963@gmail.co

DOI : http://dx.doi.org/10.13005/ojc/330224

Article Publishing History
Article Received on : February 21, 2017
Article Accepted on : March 26, 2017
Article Metrics
ABSTRACT:

New derivatives of  7-hydroxy-4-methylcoumarin were synthesized via oxidation of methyl group at C4 of parent coumarin nucleus using SeO2  as an oxidizing agent. Then the condensation with different aromatic amines and amino acids under conventional method. The structures of the title Schiff bases were elucidated by spectral analysis: FT-IR,13CNMR, and MS.All the compounds were tested in vitro for their preliminary antibacterial activity against two Gram-positive and two Gram –negative bacteria, using serial dilution method, and determining their minimum inhibitory concentrations for the title compounds. Most of the derivatives showed moderate to high antibacterial activity.Compound 7 showed a good antibacterial activity against Gram- positive Staphylococcus aureus and Micrococcus luteus also very potent antibacterial activity against Gram-negative E.coli. Density functional theory (DFT)calculations for the synthesized coumarins were performed using a molecular structure with optimized geometry. Molecular orbital calculations supported a full description of the orbitals, including spatial characteristics, nodal patterns, and the contributions of individual atoms.Highest occupied molecular orbital-lowest unoccupied molecular orbital energies and structures are demonstrated.

KEYWORDS:

Antibacterial activity; broth dilution method; density functional theory(DFT); 7-hydroxy-4-methylcoumarin; Schiff base

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Hussein D. M, Al-juboory S. B, Mahmood A. A. R. Synthesis, Characterization and Antibacterial Evaluation With Computational Study of new Schiff Bases Derived from 7-Hydroxy-4-Methyl Coumarin. Orient J Chem 2017;33(2).


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Hussein D. M, Al-juboory S. B, Mahmood A. A. R. Synthesis, Characterization and Antibacterial Evaluation With Computational Study of new Schiff Bases Derived from 7-Hydroxy-4-Methyl Coumarin. Orient J Chem 2017;33(2). Available from: http://www.orientjchem.org/?p=32371


Introduction

Coumarins are important class of compounds, they demonstrate useful and different activities, often depending on the substituents they include, benzopyran moiety 1,2. Coumarins are natural compounds produced by various plant sources. Their structures contain fused benzene and pyrone rings. Recently, they have fascinated and attractive research work, due to their remarkable biological and pharmacological activities, which include antibacterial, antifungal, anticoagulant, antioxidant, anticancer, and anti-inflammatory properties 3,4. Coumarins showed strong antibacterial activity against both Gram-positive and Gram-negative bacteria, especially against Gram-negative bacteria, by damaging cell membrane.

The advantages of coumarins as potential antibacterial compounds, due to their broad range of antibacterial activity; also they are secreted by plants as phytoalexins and have defensive mechanism against attacks from pathogens, and they are environmentally friendly and not vulnerable to develop bacteria resistance 4- 6.

Azomethine group (-C=N-) containing compounds usually known as Schiff bases have been synthesized by the treatment of primary amines with active carbonyls. Schiff bases form a significant class of compounds in medicinal chemistry, with diverse biological applications that include antioxidant, antibacterial7-10. Coumarins containing a Schiff base moiety are predictable to have improved antitumor and other distinctive activities 11.

Some literatures show that the reaction of 4-methyl benzo coumarin with selenium dioxide reveals the corresponding 4-formyl derivative, which eventually has been reacted with some primary aromatic amines to get Schiff bases with significant antibacterial activities 12

Vol33No2_Synt_Dana_scheme

Due to the importance and established pharmacological activity of these compounds, the  aim of the present work is to synthesize new Schiff bases at C4 of the parent coumarin nucleus, as promising antibacterial agents,  against both Gram positive and Gram negative bacteria. Also, a computational study was planned to calculate some thermodynamic parameters. Thus,  the synthesis of new series of Schiff bases derived from 7- hydroxyl-4-methyl coumarin has been achieved.

Materials and Methods

Chemicals used during the synthesis, supplied by Sigma-Aldrich. Solvents were dried and distilled before use. Completion of reactions and the purity of compounds were ascertained by thin-layer chromatography (TLC) , using Silica gel GF254 (type 60) pre-coated Aluminium sheets, Merck (Germany).Melting points were determined using Stuart/SMP3 melting point apparatus version 5.0 in open capillary tubes, and were uncorrected. IR(KBr) spectra ʋ,cm-1 were recorded using Thermo Scientific™ Nicolet™ iS™10 FT-IR Spectrometer in Pioneer company for pharmaceutical industry-Sulaimani-Kurdistan-Iraq. 13C-NMR spectra were recorded on Bruker FT–NMR spectrophotometer 400, in the  College of Pharmacy-Hamedan University of Medical Sciences- Hamedan-Iran, using deuterated dimethyl sulfoxide (DMSO-d6) and deuterated chloroform (CDCl3) as internal standards. Chemical shifts were expressed in δ ppm. MS was run at College of Pharmacy-Hamedan University of Medical Sciences- Hamedan-Iran, using Agilent Technology (HP), GC/MS model 5973 network mass selective detector. The values were expressed as m/z. The synthetic method is depicted in Scheme 1.

Synthesis of 7-Hydroxy-4-Formyl Coumarin (1)13, 14

7-hydroxy-4-methyl coumarin (0.005 mol, 1 g) was dissolved in hot xylene (50 ml), the solution was cooled down and selenium dioxide (0.009 mol, 1 g) was added. The solution was refluxed for the period of 12 h, then filtered while hot to remove the insoluble selenium. The solvent was removed to get the desired product.

Yellow powder.Yield 35%; m.p. 222-224ºC; IR(KBr) ʋ,cm-1:3233 (OH) str.,3050 Ar(CH) str., 2850 (H-C=O) aldehydic hydrogen str., 1723 (C=O) str. of lactone, 1698(C=O) str. of aldehyde, 1599,1516 (ArC=C) str., 1410 (OH) phenol bend.,1068(C-O) str. of lactone;13CNMR(100MHz),DMSO-d6,δ ppm): 194.31(C=O aldehyde),161.54(C=O lactone),160.78, 155.26, 127.08,112.49 and 102.57(C aromatic and alkene); mass spectroscopy Calcd. for C10 H6O4 (m/z,%):190[M]+.(27.6%), 162[M-CO](10%), 161[M-COH](14.9%),148[M-ketene](100%) ,104(17%).

General Method for the Synthesis of Aromatic Amine Schiff Bases (2-6)15-17

Appropriate aromatic amine (0.005) mol of [4-Nitro aniline 0.69 g, 4-amino acetophenone 0.67 g, 4-amino antipyrine 1.01g,4-amino ethyl benzoate 0.82 g, and 2-amino-5-mercapto-1,3,4-thiadiazole 0.66 g] each was added with continuous stirring to a solution of compound 1, (0.005 mol, 0.95g) and two drops of glacial acetic acid in absolute ethanol (30 ml). The mixture was refluxed for 7 h, and the reaction was monitored by TLC, the yellow colored precipitate was formed and collected by filtration, dried and recrystallized from ethanol.

Synthesis of 7-Hydroxy-4-(4-Nitrophenyl)Imino)Methyl)-2H-Chromene-2-One(2)

Yellow powder,yield 65%;m.p. 201-204ºC; IR(KBr)ʋ,cm-1:3481(OH)str., 1710(C=O)str. of lactone, 1682 (C=C) str., 1624(C=N) str., 1592 and 1500 (Ar-C=C) str., 1389 (NO2) str., 1068 (C-O) str. of lactone; 13CNMR(100MHz),CDCl3 ,δ ppm):162.61(C=O lactone), 160.46 (C=N), 155.02, 154.02, 154.00, 152.78 ,138.92, 128.52, 126.41, 125.99, 113.26, 111.07, and 102.96(C-aromatic and alkene); mass spectroscopy Calcd. forC16H10N2O5, (m/z,%): 310 [M]+.(31.2%), 293[M-OH](23.7%), 264[M-NO2](6.2%),188[M-C6H4-pNO2](3.7%), 161(7.5%).

Synthesis of 4-(4-Acetylphenyl)Imino)Methyl)-7-Hydroxy-2H-Chromene-2-One (3)

Yellow powder, yield 53%;m.p. 187-189ºC; IR) (KBr)ʋ,cm-1:3359(OH) str., 3080 Ar(CH) str.,2920 (CH3)str., 1704(C=O) str., 1670(C=C) str., 1610(C=N) str., 1589Ar(C=C) str., 1388(CH3) bend., and 1068(C-O) str. of lactone; 13CNMR(100 MHz),CDCl3, ,δ ppm):197.51(C=O ketone),162.52(C=O lactone), 160.90(C=N),155.09,153.86,151.66,131.5 131.05,129.93,125.90,113.52,112.53,103.31(C-aromatic and alkene) and 26.07 (CH3-C=O);mass spectroscopy Calcd. for C18H13NO4,(m/z,%):307 [M]+.(8.9%), 292(3.8%), 264(12.8%),188(5.1%),161(3.8%).

Synthesis of 4-(7-Hydroxy-2-Oxo-2H-Chromene-4-Yl)Methylene)Amino)-1,5-Dimethyl-2-Phenyl-1H-Pyrazole-3(2H)-One(4)

Intense yellow powder ,yield 71%;m.p.192-195ºC; IR(KBr)ʋ,cm-1:3300(OH) str.,3065 Ar(CH) str.,1718(C=O) str.of lactone 1652(C=C) str.,1137(C-N) str. of diazole, 1607 (C=N) str., 1507 Ar(C=C) str., 1403(OH) bend.,1368(CH3)bend.,1070(C-O) str. of lactone; 13CNMR(100 MHz),CDCl3, ,δ ppm):166.28(C=O lactone), 161.80(C=O cyclic amide),160.90(C=N), 158.10,151.10,129.50,125.73,113.28,111.12,103.25(C-aromatic and alkene),34.70(CH3-N),18.73(CH3); mass spectroscopy Calcd. forC21H17N3O4, (m/z,%):375 [M]+.)(7%), 374(3.3%),188(6.6%),161(13.3%).

Synthesis of Ethyl 4-(7-Hydroxy-2-Oxo-2H-Chromene-4-Yl)Methylene)Amino)Benzoate (5)

Pale yellow powder, yield 44%; m.p. 211-213ºC; IR(KBr)ʋ,cm-1:3350(OH) str., 3080 Ar(CH) str.,2978(CH3) str., 1760(C=O) str. of lactone, 1745(C=O) str., of ester,1682(C=C) str., 1640(C=N) str., 1597 and 1517 Ar(C=C) str.,1474(CH2) bend.,1389(CH3) bend., 1069(C-O) str. of lactone, 1044(C-O) str. of ester; ; 13CNMR(100 MHz),CDCl3, δ ppm): 166.97 (C=O ester), 162.58(C=O lactone), 160.74(C=N),158.63,155.03,150.76, 131.60, 130.77, 125.90, 112.48, 111.29, 103.26(C-aromatic and alkene), 60.56(CH2-O), 14.42(CH3); mass spectroscopy Calcd. forC19H15NO5,(m/z,%):337[M]+.(32.4%), 320[M-OH(9.5%)],308[M-CH3-CH2](16.2%), 292[M-CH3CH2O](20.2%), 264[M-CH3CH2CO2](33.7%).

Synthesis of 7-Hydroxy-4-(5-Mercapto-1,3,4-Thiadiazole-2-Yl)Imino)Methyl)-2H-Chromene-2-One (6)

Pale yellow powder, yield 61%;m.p.251-254ºC; IR(KBr) ʋ,cm-1 :3380(OH)str.,3074Ar(CH) str.,2550(SH) weak str.,1760 (C=O lactone) str., 1676(C=C) str.,1639(C=N) str.,1598 and 1505 Ar(C=C) str.,1066(C-O) str. of lactone; 13CNMR(100 MHz),CDCl3, δ ppm):181.11(C-SH),162.17(C=O lactone), 158.88(C=N), 155.09, 153.46, 113.24, 111.48 and 103.40 (C-aromatic and alkene);mass spectroscopy Calcd for C12H7N3O3S3, (m/z,%):305[M]+. (4%), 304(4%), 272[M-SH](6.5%),188(9.2%),161(30.2%).

Synthesis of Amino Acid Schiff Bases (7-8)17-20

A solution of compound 1 (0.01 mol, 1.9 g) in absolute ethanol(20 ml)  was added dropwise to a homogenous solution of each amino acid (0.01mol); glycine (0.75 g and alanine 0.89 g) and sodium hydroxide (0.01mole, 0.4 g) in absolute ethanol (20 ml)  with continuous stirring. The solution’s color changed immediately and after 2-3 minutes. (1 ml) acetic acid was added. Stirring continued for 24 h and 12 h for glycine and alanine respectively, the obtained precipitate was collected by filtration, washed with cold ethanol, dried and recrystallized from methanol.

Synthesis of 2-(7-hydroxy-2-oxo-2H-chromene-4-yl)methylene)amino)acetic acid (7)

Pale yellow powder, yield 61%,m.p.198-200ºC; IR(KBr)ʋ,cm-1 :3465 phenolic (OH) str., 3200-2500 (OH) br.str., of carboxylic acid,3031Ar(CH) str., 2987,2871 (CH2) str., 1704 (C=O) str., reduced due to conjugation,1640 (C=C) str.,1600 (C=N) str., 1500 Ar(C=C) str.,1470 (CH2) bend.

1410(OH) bend., 1071(C-O) str.; 13CNMR(100 MHz),DMSO-d6,δ ppm):174.16(C=O carboxylic acid),163.25(C=O lactone),161.01(C=N),156.91,154.16,126.85,113.89,111.69and106.05(C-aromatic and alkene),56.52(CH2-); mass spectroscopy Calcd. for C12H9NO5,(m/z,%): 247[M]+.(13.7%), 246(7.5%), 202(12.5%), 188(15%),161(82.5%).

Synthesis of 2-(7-hydroxy-2-oxo-2H-chromene-4-yl)methylene)amino)propanoic acid(8)

Milky powder, yield 173-176ºC; IR(KBr)ʋ,cm-1:3364 phenolic(OH),3253-2503(OH) br.str of carboxylic acid, 3078Ar(CH) str.,2948 (CH3) str.,1720 (C=O) reduced due to conjugation,,1645(C=C) str.,1617 (C=N) str.,1585 and 1519 Ar(C=C) str.,1411(OH) bend., 1361(CH3) bend.,1065(C-O) str.; 13CNMR(100 MHz),DMSO-d6,δ ppm):174.20(C=O carboxylic acid),165.1(C=O) lactone,161.18(C=N),155.83,154.17,126.64,114.56,110.65,102.82(C-aromatic and alkene),56.8(CH-),18.60 (CH3); mass spectroscopy Calcd. for C13H11NO5,(m/z,%): 261[M]+.(6%), 260(4.8%), 246[M-CH3](5.4%), 229(42.1%), 216[M-COOH](12%),188(10.8%).

Antibacterial Activity

The new title compounds 2-8 were screened for their preliminary antibacterial activity by using macro broth dilution method against two Gram-positive (G+ve) bacteria Staphylococcus aureus and Micrococcus luteus, and two Gram-negative     (G-ve) bacteria Escherichia coli and Pseudomonas aeruginosa to determine the MIC in vitro. A series of 13 tubes containing 1 ml of Muller-Hinton media autoclaved and cooled then inoculated with 50 µl bacterial inoculum of bacterial suspension at McFarland turbidity of 0.5. Then defined concentrations of coumarin derivatives are added to each tube except the negative control in which the solvent (DMSO) was added and a positive control with bacterial inoculum without adding any coumarin derivative, all are incubated aerobically at 37 0C for 24 hour, then MIC is determined by visual observation as the lowest concentration that inhibits bacterial growth appears clear solution.

Results and Discussion

Chemistry

The new title coumarin derivatives, (Scheme 1) have been synthesized from 7-hydroxy-4-methyl coumarin by oxidation of the methyl group (CH3) at the carbon 4, using SeO2 as an oxidizing agent and hot xylene, to afford 7-hydroxy-4-formy coumarin 1, which is characterized by an IR band of aldehyde (C=O) stretching displayed at 1698cm-1, aldehydic hydrogen stretching (H-C=O) at 2850 cm-1 , in addition, the 13CNMR-exhibited characteristic peak due to aldehydic (C=O) at 194.54ppm.

The aromatic amine Schiff bases 2-6 produced in a satisfactory yield, and by the condensation of compound 1 with different aromatic amines using absolute ethanol as a solvent. The(C=N) band showed in the IR spectra at the range 1640-1607 cm-1 and in the 13CNMR-displayed characteristic peak at 160.90-159.88 ppm.

The amino acid Schiff bases 7-8 were prepared by the reaction of the compound 1 with each of glycine and alanine in a basic medium (NaOH), using absolute ethanol as a solvent. The (C=N) stretching of the amino acid Schiff base, has been characterized in the IR at 1617 and 1600 cm-1 and in 13CNMR-displayed peaks at161.18 and 161.01ppm for alanine and glycine, respectively.

It must be noted, for the mass spectral data of each title compound 2-8, showed a characteristic peak (m/z) assigned the molecular ion peak[M]+., also, prominent peaks assigned for the fragment of each derivative,(experimental part).

Scheme 1: Synthesis of the title coumarin derivatives (2-8) Scheme 1: Synthesis of the title coumarin derivatives (2-8)



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Antibacterial Activity

The tube dilution technique is performed for preliminary screening antibacterial activity for the title coumarin derivatives. Two Gram-positive bacteria Staphylococcus aureus and Micrococcus luteus, and two-Gram negative bacteria E.coli and Pseudomonas aeruginosa, were used to find out the minimum inhibitory concentration,(MIC) in vitro, for the new derivatives. The results are listed in table1.

Table 1: Minimum inhibitory concentration(MIC) of coumarin derivatives 2-8 by using tube dilution method.

.Compound No

Staphylococcus aureus (G+ve)

Conc. µg/ml

Micrococcus luteus (G+ve)

Conc. µg/ml

Escherichia coli (G-ve)

Conc. µg/ml

Pseudomonas aeruginosa (G-ve)

Conc. µg/ml

2

79

40

123

192

3

63

50

98

154

4

40

63

192

240

5

98

123

154

192

6

40

40

98

79

7

40

40

31

50

            8            300           240           192              123

Note:C- = negative control (solvent,DMSO), C+ = positive control indicates broth without adding any title coumarin derivative

From the results illustrated in table 2, showed that all  title coumarin derivatives have antibacterial activity in vitro against both Gram positive and Gram negative bacteria with MICs range between 31-300 µg/ml in which they vary according to the derivatives and bacteria.

The lowest MIC is 31µg/ml for compound 7, ( most potent), against Escherichia coli, and also MIC is 40 µg/ml observed for the compounds 6 and 7 against Gram-positive Staphylococcus aureus and Micrococcus luteus, respectively.While the highest MIC is 300µg/ml for compound 8 against Staphylococcus aureus.

Computational Studies

The quantum chemical calculations were validated on the new coumarin derivatives using Density Functional Theory (DFT) methodology with 3-21G* basis,while the molecular atomic charges were approved using the Mulliken population analysis.

The molecular representation sketch of the new coumarin compounds was plotted using Chem.Bio-Office 2010 software.

The following chemical parameters calculated using DFT are: total energy (E), chemical hardness (η), electronic chemical potential (μ) and electrophilicity (ω)

Structural and Electronic Properties

Compounds 1, 3, 4, 6,7 and 8 with optimized geometries and 3D geometrical structures are demonstrated in figure 1, and the data listed in table 2 showed the highest atomic charge of all coumarin compounds 1-8 and confirmed the atoms are the most reactive toward the addition substitution reactions. The calculated bond angle and twist angle, stretch. , bend, stretch-bend, torsion and stereochemistry, indicated the title coumarin derivatives are non-planar molecules.

Table 2:Calculated  chemical parameters of the synthesized coumarin derivatives, using DFT  with 3-21G* basis. Table 2: Calculated  chemical parameters of the synthesized coumarin derivatives, using DFT  with 3-21G* basis.

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 Figure 1: Optimized 3D geometrical structures for compounds: 1,,3, 4, 6,7 and 8.

Figure 1: Optimized 3D geometrical structures for compounds: 1,,3, 4, 6,7 and 8.



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The quantum mechanical method have been approved for compounds 1, 3, 4, 6,7 and 8. The molecular structure (optimized form) of the most stable one is shown in figure 1. While the calculated energies are presented in table 3.

The contour plots of the frontier orbitals for the ground state of compounds 1, 3, 4, 6,7 and 8 are shown in the figures: 2, 3 4,5,6 and 7 together with the Highest Occupied Molecular Orbital (HOMO) and the Lowest Unoccupied Molecular Orbital (LUMO). It is remarkable to view that both orbitals are considerably circulated over the conjugation plane.

In addition, it can also be seen from the figures 2-7 that the HOMO orbitals are located on the substituted molecule, while LUMO orbitals look like those obtained for the unsubstituted molecule and therefore, the substitution has contributed a control on the electron donation ability while influencing only a small effect on electron acceptance ability.

Table 4. Showed the HOMO and LUMO gap .The lower values in the HOMO and LUMO energy gap would give details the eventual electron- donor-acceptor-complex interaction occurring within the molecules.

The values of HOMO for compounds 1, 3, 4, 6,7 and 8 are low. Indicate these molecules have low ionization energies inferring that, they can lose the electrons easily20. Chemical hardness is related with the stability and reactivity of a chemical compounds , it measures the resistance to change in the electron distribution or charge transfer.

The molecule with the higher HOMO–LUMO energy gap, is harder and more stable/less reactive molecule..
Electronic chemical potential (μ) is known as the negative of electronegativity of a molecule 21 and describes the escaping tendency of electrons from an equilibrium system.

Global electrophilicity index (ω), is calculated using the electronic chemical potential and chemical hardness.This index measures capacity of a species,2to accept electrons22,23. It is a total of the stabilization in energy after a system accepts an additional amount of electronic charge from the environment 24.

Table 3 (row 5)contains the computed chemical hardness values for compound 1,3,4,6,7 and 8. The consequences indicate that compound 1 is harder and less reactive than compound 3 which is harder and less reactive than compound 4. The values of (μ) for compound 1,3,4,6,7 and 8 are shown in Table 3 (row 4).

The trend in electronic chemical potential for compound 4> compound 6 > compound 8> compound 7 > compound 3> compound 1.

The dipole moments, total energy (E), the partition coefficient (logP), chemical hardness (η), electronic chemical potential (μ) and electrophilicity (ω) of compounds 1, 3, 4, 6,7 and 8. were also calculated and listed in Table 3.

Table 3: Global chemical reactivity of compounds 1, 3, 4, 6, 7 and  8

Parameter

Comp.1

Comp.3

Comp.4

Comp.6

Comp.7

Comp.8

Total energy (Kcal / mol)

19.3707

43.2876

60.986

60.986

32.8275

19.4169

Dipole moment (debye)

7.0936

6.2501

7.7916

7.7916

13.5102

10.0628

Log P

0.42

1.85

0.99

3.18

0.14

0.63

electronic chemical potential (μ)

-8,893

-7.574

-0.053

-1.3075

-7.087

-4.375

chemical hardness  η

1.966

0.914

0.051

1.0085

1.624

1.585

electrophilicity (ω)

20.174

31.38

0.0274

0.847

15.464

6.013

 

The more reactive or less stable compound, is the higher chemical potential,. Therefore, compound 4 is the more reactive than other compounds. While compound 1 is the least reactive. The electrophilicity values (ω) (Table3, row 6) for the compound 1,3,4,6,7 and 8 are 20.174 eV, 31.38 eV, 0.0274 eV, 0.847 eV, 15.464eV and 6.013 eV. Among the compounds, compound 3 is considered the strongest nucleophile while compound 1 is considered  as  a  strongest electrophile.

Electrostatic Potential Charges and Related Quantum Chemical Properties

The distribution of the electronic density (electrostatic potential charges), related quantum chemical parameters [dipole moment (Table 3, row 2), and the partition coefficients of the compounds (log P; Table 3, row 3) were calculated for observed compound 1,3,4,6,7 and 8. These values and properties are very helpful and can be used in order to estimate chemical properties and possibilities for the interaction of compound 1,3,4,6,7 and 8  with target sites (receptors, enzymes) as well as their transporting system through the cell membranes and brain-blood barrier. All these structural, electronic parameters and log P can be used for a construction of quantitative structure-activity relationship (QSAR) model because all of them are closely correlated to pharmacokinetics and  pharmacodynamics properties 21.

Redox potential can be measured from HOMO/LUMO gap; it is significant for the oxidative-metabolism pathway  involving cytochrome P450 enzymes. The observed HOMO/LUMO gap ,(ΔE) (Table 4), is used to calculate redox potential. The lower  negative  values of both HOMO and LUMO energies designate that these compounds have the general properties of the reductors. This information may be significant for drug metabolism, as the oxidation (and sometimes the reduction) is the main metabolic pathway for many drug molecules.

All title coumarin derivatives are polar molecules, depending  on their electric dipole moments (Table 3), The most polar molecule is compound 7, while compound 6 is found to be the most lipophilic according to the log P values (Table 3row 3).

 Figure 2: Highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) of compound 1. Figure 2: Highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) of compound 1.

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 Figure 3: Highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) of compound 3. Figure 3: Highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) of compound 3. 

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Figure 4: Highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) of compound 4. Figure 4: Highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) of compound 4.

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 Figure 5: Highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) of compound 6.

Figure 5: Highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) of compound 6.



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Figure 6: Highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) of compound 7.

Figure 6: Highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) of compound 7.



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Figure 7: Highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) of compound 8.

Figure 7: Highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) of compound 8.

 



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Table 4: HOMO and LUMO energies (eV) of title coumarin derivatives.

Comp. HOMO LUMO ΔE (eV) HOMO-1 LUMO+1 ΔE (eV)

1

-10.859

-6.927

-3.932

-12.294

0.029

-12.323

3

-8.488

-6.66

-1.828

-11.5

-3.293

-8.207

4

-0.104

-0.002

-0.102

-0.55

1.912

-2.462

6

-2.316

-0.299

-2.017

-4.128

0.303

-4.431

7

-8.711

-5.463

-3.248

-12.045

-0.315

-11.73

8

-5.945

-2.769

-3.176

-9.477

-0.293

-9.184

 

The UV-VIS absorption spectra of the compounds: 1, 3and 4 were recorded in (ethanol). The absorption peaks are observed at 248, 287 and 222 nm, and 267 and 295 nm for the compounds 6, 8. It can be conclude that these peaks imply to the n→p* and p→p* transitions. The 3D plots of the, HOMO−1, HOMO, LUMO, LUMO+1, LUMO+2 and the corresponding energy levels of the compounds 1, 3, 4,6,7 and 8 are shown in the figures 2, 3,4,5 and 6, respectively. The theoretical electronic transfer (ET) for compound 1, 3,4,6 were corresponding to the UV-VIS spectral absorption peaks and the electronic transfer of HOMO plus LUMO and HOMO plus LUMO+1, respectively. The increased theoretical absorption wavelengths of the title compounds have slight blue-shifts.

Figures 2, 3, 4, 5,6 and 7 showed the six main orbitals that have contributed in the vertical electronic transitions for compounds 1, 3, 4, 6, and 8. These orbitals, namely, HOMO−1, HOMO, LUMO, and LUMO+1, represent the three highest occupied orbitals and three lowest unoccupied orbitals in the compounds 1, 3, 4, 6,7 and 8. Similar spatial distribution of orbitals between HOMO/HOMO−1and LUMO/LUMO+1 pairs and the population analysis for compounds 1, 3, 4, 6,7 and 8, are listed in table 5.

Table 5: Electron density for title coumarin derivatives.

COMP.

Electron density

HOMO

LUMO

HOMO-1

LUMO+1

1

carbonyl group substituted on coumarin coumarin and the carbonyl group substituted on coumarin coumarin ring the phenol ring of the coumarin, and also the carbonyl group that substituted on the coumarin

3

C=N- bond between the benzene ring and coumarin ring on    C= N- bond between benzene ring and coumarin ring, and the carbonyl of ketone and the coumarin ring C= N- bond between the benzene ring and coumarin ring, and carbonyl of ketone and coumarin ring on C= N- bond between the benzene ring and the coumarin ring, and the carbonyl of ketone

4

the N-N-bond of the five-member, on the coumarin ring and the methyl groups of the diazo ring whole molecule whole molecule N-N-bond of the five-member, on the coumarin ring, and the phenol groups of the coumarin ring

6

the N-N-bond of the five-member and on the coumarin ring lactone ring of the coumarin, the N-N-bond of the five-member,  and the C=N group  between coumarin and the thiadiazole the N-N-bond of the five-member and on the coumarin ring phenol ring of the coumarin

7

the C=N group between coumarin and carboxylic acid the C=N group between coumarin and carboxylic acid whole molecule the C=N group between coumarin and carboxylic acid and phenol ring of the coumarin

8

the C=N group between coumarin and carboxylic acid on C=N group between coumarin and carboxylic acid and the coumarin the C=N group between coumarin and carboxylic acid on C=N group between coumarin and carboxylic acid and phenol ring of the coumarin

 

Conclusion

In the present work a series of new coumarin derivatives have been synthesized from 7-hydroxy-4-methylcoumarin by the oxidation of methyl group at C4 of the parent coumarin nucleus, using SeO2, to produce formyl group, then the formation of different derivatives under conventional method. The title coumarin derivatives were screened for their preliminary antibacterial activity using serial dilution method, by determining their minimum inhibitory concentrations (MIC), and showed moderate to highest antibacterial activity against Gram-positive and Gram-negative bacteria.
Compound 7 showed the highest antibacterial activity against Gram- positive Staphylococcus aureus and Micrococcus luteus, and potent antibacterial activity against Gram-negative E.coli. The synthesized derivatives were studied theoretically by using DFT calculations., and the stereochemistry was estimated and found that compounds 1, 3, 4, 6, 7 and 8. are not- planar molecules.

Acknowledgement

We are grateful to Dr.Emad M. Alkhafaji /Faculty of Science-School of Chemistry, University of Sulaimani, for continuous help and discussions during the work, also many thanks to School of Pharmacy /Dept. of Pharmaceutical Chemistry- University of Sulaimani, for providing laboratory facilities and carrying out the research.

Conflict of Interest

The authors declare no conflict of interest.

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